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Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST002049
species: Pinus taeda
miRNA family: miR166d
source: miRNEST

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGAATGTTGTCTGGCTCGACT

miRNA*
 TCGGACCAGGCTTCATTCCCC

mismatches: 4
bulges: 0
View larger
pre-miRNA
 AAGACCTCCATGTTGATTGAGGGGAATGTTGTCTGGCTCGACTTCATCCGGATTTGGGCTCCAATGTTCGGATGCCGTCGGACCAGGCTTCATTCCCCCC
AATCGGAGATCTTCCCG

dot-bracket secondary structure
((((.((((.....(((((.((((((((..((((((.(((((..(((((((((((((...)))).)))))))))..))))).))))))..)))))))).)
)))))))).))))....


SIMILARITIES
miRBase pta-MIR166a: 2e-48

PMRD pta-miR166a: 2e-48

microPC miR166: 9e-39		UniProt no hits

RFAM mir-166: 0.0000001		most similar mature miRNAs

Identical with: pta-MIR166a from miRBase (MNEST039420)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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