miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST002049
species: Pinus taeda
miRNA family: miR166d
source: miRNEST

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGAATGTTGTCTGGCTCGACT

miRNA*
 TCGGACCAGGCTTCATTCCCC

mismatches: 4
bulges: 0
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pre-miRNA
 GAAGACCTCCATGTTGATTGAGGGGAATGTTGTCTGGCTCGACTTCATCCGGATTTGGGCTCCAATGTTCGGATGCCGTCGGACCAGGCTTCATTCCCCCC
AATCGGAGATCTTCCCG

dot-bracket secondary structure
)((((.((((.....(((((.((((((((..((((((.(((((..(((((((((((((...)))).)))))))))..))))).))))))..)))))))).)
)))))))).))))....


SIMILARITIES
miRBase pta-MIR166a: 2.0E-48

PMRD pta-miR166a: 2.0E-48

microPC miR166: 9.0E-39		UniProt no hits

RFAM 6mir-166: 1.0E-7		most similar mature miRNAs

Identical with: pta-MIR166a from miRBase (MNEST039420), miR166 from microPC , pta-miR166a from PMRD , miR166 from microPC

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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