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Species belonging to selected taxon:

Pinus taeda



ABOUT THIS RECORD

ID: MNEST002050
species: Pinus taeda
miRNA family: MIR1316
source: miRNEST

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCCATACACAAACCATTGGAA

miRNA*
 CCAATGGTTTGTGCAAGGAAG

mismatches: 3
bulges: 0
View larger
pre-miRNA
 AAGGTGTAAAAGAAAAGATCTTCCATACACAAACCATTGGAATCCTTCTTATTCTGCAATTGGATTGGGAAGAAGATGCATTGAAGAATGAATTTTCGTT
AGCCCCAAAAGTAAGATCCTGACTAACTACTGGTACTCGATGATTGTTTGTCTGGAGTCTTTGTTGTCTTGTTCGTACCATGACCCTCAACTTTTTCTCA
TTTGGTCCAGTTTCTATTCATGAATACTTAGTCTTTGTTCGCTTCTTCGTACCATGACCCTGAACTTTTTCTCATTTGGTCCGGTTTCCACTCATAAATA
ATTAGTGTTTGTTATTAAGATCATGGTTCGTTAGTTTTGCAGAGTTGTTGTTTGCTTCTTCGTACCATGACTCTCATCTTTTTCTCATTTGGTCCAGTCC
CCACTGATAAGTGGCTAGTATTTCTTTTAAGATCATGGTTGATTGGTAATGTGAGGAAAACAGGTTCCAATGGTTTGTGCAAGGAAGATCTTTTTGCTAG
CAAAT

dot-bracket secondary structure
....(((....(((((((((((((...((((((((((((((((((((((((.(((......))).))))))).(((((...((((((((((....)))).
(((....((((((((.((.(((.((...(((((.(((.(((((......((..((.(((..((.((.........)).)).)))))...))......)))
)).))))))))...)).))).))...))))..))))....))))))))).(((..((((.(((........)))...)))).))).((.....(((((((
.....)))))))......))(((((((.((..((....(((((.......)))))..)).)).)))))))....)))))(((((((((.....((((((.
(((((....)))))(((.....(((....)))...)))..))))))....)))))))))...)))))))))))))))))...)))))))))))))....)
))...


SIMILARITIES
miRBase pta-MIR1316: 9e-33

PMRD pta-miR1316: 9e-33

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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