ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR482
source: miRNEST
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTCCCTATTCCTCCCATT miRNA* TGGGAGGGTAGGAGAAGGCT mismatches: 0 bulges: 2 |
pre-miRNA
AAGTCTTGAGGAGTGGGAGGGTAGGAGAAGGCTCTGTGGTGAGGTCTCAGTCATAATCTCATCAGTCTTCCCTATTCCTCCCATTCCTATTGCCT
dot-bracket secondary structure
........(((((((((((((((((.((((((....(((((((((..........))))))))))))))))))).))))))))))))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAGTCTTGAGGAGTGGGAGGGTAGGAGAAGGCTCTGTGGTGAGGTCTCAGTCATAATCTCATCAGTCTTCCCTATTCCTCCCATTCCTATTGCCT
dot-bracket secondary structure
........(((((((((((((((((.((((((....(((((((((..........))))))))))))))))))).))))))))))))).......
SIMILARITIES| miRBase pta-MIR482c: 4e-40 PMRD pta-miR482c: 4e-40 microPC miR482: 0.00000007 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: pta-miR482c from PMRD (MNEST051569) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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