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Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST002057
species: Pinus taeda
miRNA family: MIR396
source: miRNEST

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTCCACAGCTTTCTTGAACTT

miRNA*
 GTTCAAGAAAACTGTGGGAAA

mismatches: 1
bulges: 0
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pre-miRNA
 TTGTCATACTTTTCCACAGCTTTCTTGAACTTTACGTGTACGGGACGAGGAGATTCTGATTTCTACGTCTGCGATTAAAGTTCAAGAAAACTGTGGGAAA
GCATGGTA

dot-bracket secondary structure
...((((.(((((((((((.((((((((((((((..(((...(((((.((((((....)))))).))))))))..)))))))))))))).))))))))))
).))))..


SIMILARITIES
miRBase pta-MIR396: 1e-56

PMRD pta-miR396: 1e-56

microPC miR396: 3e-44		UniProt no hits

RFAM MIR396: 2e-52		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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