miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Pinus banksiana, Pinus banksiana, Pinus contorta, Pinus contorta, Pinus pinaster, Pinus pinaster, Pinus taeda, Pinus taeda



ABOUT THIS RECORD

ID: MNEST002062
species: Pinus taeda
miRNA family: MIR157
source: miRNEST

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAGAAGATAGAGAGCACA

miRNA*
 TGCTCTCGTTGATTTTGTCATC

mismatches: 4
bulges: 1
View larger
pre-miRNA
 TCGTGTCGATGACAGAAGATAGAGAGCACAACCGCTCAGATGCCGGCACTCTGCGTTTGAGGTGTATGTGCTCTCGTTGATTTTGTCATCAAATTA

dot-bracket secondary structure
.......((((((((((....(((((((((((..(((((((((.((...)).)))))))))..)).))))))))).....))))))))))......


SIMILARITIES
miRBase pta-MIR156b: 7e-42

PMRD pta-miR156b: 7e-42

microPC miR157: 9e-23		UniProt no hits

RFAM no hits		most similar mature miRNAs

Identical with: pta-miR156b from PMRD (MNEST051552)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;