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Species belonging to selected taxon:

Euphorbia esula, Hevea brasiliensis, Jatropha curcas, Linum usitatissimum, Manihot esculenta, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Bruguiera gymnorhiza, Populus trichocarpa, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST002106
species: Populus deltoides
miRNA family: MIR166
source: miRNEST

Taxonomy by NCBI:
Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCCCC

miRNA*
 GGAATGCTGGCTGGCTCGAAG

mismatches: 2
bulges: 2
View larger
pre-miRNA
 AAAGGTGTGTGGGTGTGTTGAGGGGAATGCTGGCTGGCTCGAAGCTTAAGCAAAGAGTATCCTAACATGAAACAACTGTTAAGGCTTCGGACCAGGCTTC
ATTCCCCTCAAACATACAAGNTTATTT

dot-bracket secondary structure
.((..((((((......((((((((((((..((((((.(((((((((.((((....((.((.......)).))...)))).))))))))).))).))).)
))))))))))).))))))...))....


SIMILARITIES
miRBase ptc-MIR166f: 4e-50

PMRD ptc-miR166f: 4e-50

microPC miR166: 1e-44		UniProt no hits

RFAM mir-166: 3e-33		most similar mature miRNAs

Identical with: miR166 from microPC (MNEST045050)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
Source sequences
download this record




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