ABOUT THIS RECORDspecies: Populus nigra
miRNA family: MIRf1215
source: miRNEST
Taxonomy by NCBI:
Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTGGTCATTTTGTTTATAGG miRNA* TGTGAACATCTTGACCAGG mismatches: 3 bulges: 0 |
pre-miRNA
ACATTAACATCCCTGGTCATTTTGTTTATAGGACTCGGTTTTCTAGGACTTCTGGGAAGAGCTTTCTTTTGCCACAATGCAGGACAGATGTATTATACGT
GTCTGATCCCTGTGAACATCTTGACCAGG
dot-bracket secondary structure
...........((((((((...((((((((((..(((((((((((((...)))))))))..((.(((..(((......)))))).))(((((...)))))
..))))..))))))))))...))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ACATTAACATCCCTGGTCATTTTGTTTATAGGACTCGGTTTTCTAGGACTTCTGGGAAGAGCTTTCTTTTGCCACAATGCAGGACAGATGTATTATACGT
GTCTGATCCCTGTGAACATCTTGACCAGG
dot-bracket secondary structure
...........((((((((...((((((((((..(((((((((((((...)))))))))..((.(((..(((......)))))).))(((((...)))))
..))))..))))))))))...))))))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11908-akr: 3e-66 microPC no hits | UniProt sp|Q9LF38|EDL1_ARATH: 0.000000000000004 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
