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Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000212
species: Barnadesia spinosa
miRNA family: MIR171
source: miRNEST

Taxonomy by NCBI:
Barnadesia spinosa Barnadesia Barnadesioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGATTGAGCCGTGCCAATATC

miRNA*
 TATTGGCCTGGTTCACTCAGA

mismatches: 2
bulges: 0
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pre-miRNA
 ATCATGGTTTCTTGACATGAAAGTGTGGCTATGATATTGGCCTGGTTCACTCAGACAAAATCATCTAGTTTTTTTATTTGATTGAGCCGTGCCAATATCTT
AGTTCTCTTTCATTTTCATTTTTATTTA

dot-bracket secondary structure
)...........(((.(((((((...(((((.(((((((((.(((((((.(((((.((((...........)))).))))).))))))).))))))))).)
))))..)))))))..)))..........


SIMILARITIES
miRBase hvu-MIR171: 3.0E-11

PMRD zma-miR171e: 6.0E-9

microPC miR171: 4.0E-7		UniProt no hits

RFAM 1MIR171_1: 2.0E-9		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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