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Species belonging to selected taxon:

Euphorbia esula, Hevea brasiliensis, Jatropha curcas, Linum usitatissimum, Manihot esculenta, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Bruguiera gymnorhiza, Populus trichocarpa, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST002137
species: Populus nigra
miRNA family: MIR398
source: miRNEST

Taxonomy by NCBI:
Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGTGTTCTCAGGTCGCCCCTG

miRNA*
 GGAGCGACCTGAAATCACATG

mismatches: 4
bulges: 0
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pre-miRNA
 ACGATTGTGGAGGATTCCTACAGGAGCGACCTGAAATCACATGTGGGCTGCACCCTCCTGGGTTATCTTGGGCAACATGTGTTCTCAGGTCGCCCCTGCC
GGGCTTTCCTCCATATG

dot-bracket secondary structure
.....(((((((((.(((..((((.(((((((((...(((((((..(((..((((....)))).......))).)))))))...))))))))).))))..
)))...)))))))))..


SIMILARITIES
miRBase ptc-MIR398c: 1e-47

PMRD ptc-miR398c: 1e-47

microPC miR398: 9e-39		UniProt no hits

RFAM MIR398: 1e-16		most similar mature miRNAs

Identical with: miR398 from microPC (MNEST046111)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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