ABOUT THIS RECORDspecies: Populus tremula x Populus alba
miRNA family: MIRf256
source: miRNEST
Taxonomy by NCBI:
Populus tremula x Populus alba Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATCAATGGCCATTGTAAGAGT miRNA* TCTTACAGTGCCCATTGATTA mismatches: 1 bulges: 0 |
pre-miRNA
ATAGTTATAACATCTTGATCAATGGCCATTGTAAGAGTAGAAGGATCCATGAAGCAATAACTCTCTTTGCTAAAATGTGTGATAAAACATTGACTCCTGG
TATTTCACTCTTACAGTGCCCATTGATTAAGATGGTATAATGT
dot-bracket secondary structure
...((((((.(((((((((((((((.((((((((((((.((((...(((.(((((((.........)))))..(((((........)))))...)).)))
..)))))))))))))))).))))))))))))))).))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATAGTTATAACATCTTGATCAATGGCCATTGTAAGAGTAGAAGGATCCATGAAGCAATAACTCTCTTTGCTAAAATGTGTGATAAAACATTGACTCCTGG
TATTTCACTCTTACAGTGCCCATTGATTAAGATGGTATAATGT
dot-bracket secondary structure
...((((((.(((((((((((((((.((((((((((((.((((...(((.(((((((.........)))))..(((((........)))))...)).)))
..)))))))))))))))).))))))))))))))).))))))..
SIMILARITIES| miRBase ptc-MIR475a: 4e-66 PMRD ptc-miRf10050-akr: 2e-74 microPC miR475: 1e-62 | UniProt no hits RFAM MIR475: 5e-38 | most similar mature miRNAs |
Identical with: miR475 from microPC (MNEST045347) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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