ABOUT THIS RECORDspecies: Populus tremula x Populus tremuloides
miRNA family: MIRf1080
source: miRNEST
Taxonomy by NCBI:
Populus tremula x Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCCTAATCATGGCACTGCAAT miRNA* TGCAGTGCCTTGATCAGGGCT mismatches: 2 bulges: 0 |
pre-miRNA
GGCTCTCGTGAACGAAGGAGGCCCTAATCATGGCACTGCAATTCTAAATATCTGTTGGCATGTTGCGATGCCAGACGTTTGAAATTGACATATCATTTGT
TAATCAGAATTGCAGTGCCTTGATCAGGGCTTTGTTTGTTCCTGTAACC
dot-bracket secondary structure
......((.(((((((.((((((((.((((.((((((((((((((((((.((...((((((......)))))))).))))...(((((((.......)))
)))).)))))))))))))).)))).)))))))).))))))).)).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGCTCTCGTGAACGAAGGAGGCCCTAATCATGGCACTGCAATTCTAAATATCTGTTGGCATGTTGCGATGCCAGACGTTTGAAATTGACATATCATTTGT
TAATCAGAATTGCAGTGCCTTGATCAGGGCTTTGTTTGTTCCTGTAACC
dot-bracket secondary structure
......((.(((((((.((((((((.((((.((((((((((((((((((.((...((((((......)))))))).))))...(((((((.......)))
)))).)))))))))))))).)))).)))))))).))))))).)).....
SIMILARITIES| miRBase ptc-MIR1447: 2e-37 PMRD ptc-miRf11238-akr: 5e-41 microPC miR1447: 1e-50 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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