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Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST002195
species: Populus tremula x Populus tremuloides
miRNA family: MIRf1080
source: miRNEST

Taxonomy by NCBI:
Populus tremula x Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCCTAATCATGGCACTGCAAT

miRNA*
 TGCAGTGCCTTGATCAGGGCT

mismatches: 2
bulges: 0
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pre-miRNA
 GGCTCTCGTGAACGAAGGAGGCCCTAATCATGGCACTGCAATTCTAAATATCTGTTGGCATGTTGCGATGCCAGACGTTTGAAATTGACATATCATTTGT
TAATCAGAATTGCAGTGCCTTGATCAGGGCTTTGTTTGTTCCTGTAACC

dot-bracket secondary structure
......((.(((((((.((((((((.((((.((((((((((((((((((.((...((((((......)))))))).))))...(((((((.......)))
)))).)))))))))))))).)))).)))))))).))))))).)).....


SIMILARITIES
miRBase ptc-MIR1447: 2e-37

PMRD ptc-miRf11238-akr: 5e-41

microPC miR1447: 1e-50		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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