ABOUT THIS RECORDspecies: Populus tremula x Populus tremuloides
miRNA family: MIR164
source: miRNEST
Taxonomy by NCBI:
Populus tremula x Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAAGCAGGGCACGTGCA miRNA* CATGTGCCTGTCTTCCCCATC mismatches: 5 bulges: 0 |
pre-miRNA
GCAGAGAAGGTGTGTGTGAGCAAGATGGAGAAGCAGGGCACGTGCATTACTAACTCATGCATACAGAGTGAGAGAGACATTTCTTGCTCGAGTTATGACT
CTTACCTACTATAGATTTTGTTGGCCTCAGTGAGTTAGTTCTTCATGTGCCTGTCTTCCCCATCATGATCACTACCGCACCTATAT
dot-bracket secondary structure
.......(((((((.((((.((.(((((.((((..(((((((((....((((((((((((..(((((((..(((((.(((..(((....)))..))).))
)))..(((...))))))))))..))....))))))))))....)))))))))..)))).))))).)).))))...)))))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCAGAGAAGGTGTGTGTGAGCAAGATGGAGAAGCAGGGCACGTGCATTACTAACTCATGCATACAGAGTGAGAGAGACATTTCTTGCTCGAGTTATGACT
CTTACCTACTATAGATTTTGTTGGCCTCAGTGAGTTAGTTCTTCATGTGCCTGTCTTCCCCATCATGATCACTACCGCACCTATAT
dot-bracket secondary structure
.......(((((((.((((.((.(((((.((((..(((((((((....((((((((((((..(((((((..(((((.(((..(((....)))..))).))
)))..(((...))))))))))..))....))))))))))....)))))))))..)))).))))).)).))))...)))))))....
SIMILARITIES| miRBase ptc-MIR164e: 1e-72 PMRD ppl-miR164: 7e-87 microPC miR164: 9e-74 | UniProt no hits RFAM MIR164: 2e-72 | most similar mature miRNAs |
Identical with: miR164 from microPC (MNEST046101) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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