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Species belonging to selected taxon:

Euphorbia esula, Hevea brasiliensis, Jatropha curcas, Linum usitatissimum, Manihot esculenta, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Bruguiera gymnorhiza, Populus trichocarpa, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST002224
species: Populus trichocarpa x Populus nigra
miRNA family: miR168a
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa x Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCCGCCTTGCATCAACTGAAT

miRNA*
 TCGCTTGGTGCAGGTCGGGAA

mismatches: 2
bulges: 0
View larger
pre-miRNA
 TTTTAGTTACCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGATTCAGCGATTTGATTGCCAGATGGCTAAACACGATTGGCTGTGAGGCAAAT
TATAAAAAGAAAGAGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGACCGCGGTGAAGACGC

dot-bracket secondary structure
......((((((.((((((((.(((((.((((((((((.(((((.(((((((.....(((..(((((..((((((((......))))))))..)))))..
.....)))......))))))).))))).)))))))))).))))).))))))))))))))......


SIMILARITIES
miRBase ptc-MIR168b: 7e-71

PMRD ptc-miR168b: 7e-71

microPC miR168: 4e-60		UniProt no hits

RFAM MIR168: 6e-81		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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