ABOUT THIS RECORDspecies: Populus trichocarpa x Populus nigra
miRNA family: miR168a
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa x Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCCGCCTTGCATCAACTGAAT miRNA* TCGCTTGGTGCAGGTCGGGAA mismatches: 2 bulges: 0 |
pre-miRNA
TTTTAGTTACCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGATTCAGCGATTTGATTGCCAGATGGCTAAACACGATTGGCTGTGAGGCAAAT
TATAAAAAGAAAGAGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGACCGCGGTGAAGACGC
dot-bracket secondary structure
......((((((.((((((((.(((((.((((((((((.(((((.(((((((.....(((..(((((..((((((((......))))))))..)))))..
.....)))......))))))).))))).)))))))))).))))).))))))))))))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TTTTAGTTACCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGATTCAGCGATTTGATTGCCAGATGGCTAAACACGATTGGCTGTGAGGCAAAT
TATAAAAAGAAAGAGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGACCGCGGTGAAGACGC
dot-bracket secondary structure
......((((((.((((((((.(((((.((((((((((.(((((.(((((((.....(((..(((((..((((((((......))))))))..)))))..
.....)))......))))))).))))).)))))))))).))))).))))))))))))))......
SIMILARITIES| miRBase ptc-MIR168b: 7e-71 PMRD ptc-miR168b: 7e-71 microPC miR168: 4e-60 | UniProt no hits RFAM MIR168: 6e-81 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
