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Species belonging to selected taxon:

Populus x canadensis



ABOUT THIS RECORD

ID: MNEST002232
species: Populus x canadensis
miRNA family: MIR1444
source: miRNEST

Taxonomy by NCBI:
Populus x canadensis Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTCATATTCGGTCAACGTTCG

miRNA*
 AATATTGATCGAATATGTATG

mismatches: 2
bulges: 0
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pre-miRNA
 AGCTTATCGAATATTTCCTTGTTTATCCCTCGAATATTGATCGAATATGTATGAAATATGATGGTTATATGTTTCATTCATATTCGGTCAACGTTCGAGT
GATAAACAGAAATAATTGGATCTTTA

dot-bracket secondary structure
......((((.((((((..((((((((.(((((((.(((((((((((((.((((((((((.......)))))))))).))))))))))))).))))))).
)))))))))))))).)))).......


SIMILARITIES
miRBase ptc-MIR1444b: 2e-40

PMRD ptc-miR1444b: 2e-40

microPC miR1444: 5e-31		UniProt no hits

RFAM MIR1444: 3e-39		most similar mature miRNAs

Identical with: miR1444 from microPC (MNEST046448)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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