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Species belonging to selected taxon:
Botryococcus braunii
,
Coccomyxa sp. C-169
,
Volvox carteri
,
Chlamydomonas reinhardtii
ABOUT THIS RECORD
ID:
MNEST000224
species:
Botryococcus braunii
miRNA family:
MIR414
source:
miRNEST
Taxonomy by NCBI:
Botryococcus braunii
Botryococcus
Botryococcaceae
Trebouxiophyceae incertae sedis
Trebouxiophyceae
Chlorophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCATCATCATCATCATCTGAT
miRNA*
TTGATGATGGTGATCATGATG
mismatches:
2
bulges:
0
View larger
pre-miRNA
TAAA
TCATCATCATCATCATCTGAT
GAGTAGCACGAGAGCTAATTGCCAGCAAACTGCTGTGTCCCAAGCCGAGTTGACATTACACTAGTGGGTGGTACA
GACAGTACTGGACCACTGCAAATGTCCTGGCAGTGCGAGTGGTGCCTCCTCTGCAATGGTACAAGATGCTGTGTTGACATCCACAATGCAAAATGTGTAA
CGGGTGTCAGGCCTTATACACGACACGTTTATGTAACAATGAGCAACTACGCAGTGCATGCGCTCAACTTGTTTTGAACACGTACAGGTGTCTGGGCAGG
GTAAAAGAAGAGGGCGTTGTGCGGTGCAGAATACGTAGACTCATGTACCATAAT
TTGATGATGGTGATCATGATG
C
dot-bracket secondary structure
...(
((((.((((((((((((.(((
(((..((((....(((.((((((((..(((((((........)))..))))((((((....((((((.((((((.
....))))))..))))))..))))))))))))))...))).))))...)))....((((((((.((((.(((((((((((((....((((.....)))).
.))))))))........))))).)).(((((((((....((.(((...((((..(((....(((((((((((..((....)).))))))...)))))...
)))..........))))..)))....))...))))))))))).)))))))).))
).)))))))))))).))))).
.
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record