ABOUT THIS RECORDspecies: Prunus persica
miRNA family: MIR396
source: miRNEST
Taxonomy by NCBI:
Prunus persica Prunus Amygdaleae Spiraeoideae Rosaceae Rosales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACT miRNA* TTCAATAAAGCTGTGGGAAG mismatches: 1 bulges: 0 |
pre-miRNA
TCCTCCATAGACGATGATCCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCATCCATGAGATCGATCGATCTTTGCATGTGAGGCTGCAGTCACTCAC
TCACTCTCTCTCTAACTGGCTTGCGGTTCAATAAAGCTGTGGGAAGATACAGATAGGTTCAATAAAAAATCACT
dot-bracket secondary structure
..............(((.(((.((((((((.((((((((((((.((((((((((.(((.((((((....))))))((.....((((.((.(((.....))
))).))))....))..)))..)))))))))).)))))))))))).)))))))).))).))).............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCCTCCATAGACGATGATCCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCATCCATGAGATCGATCGATCTTTGCATGTGAGGCTGCAGTCACTCAC
TCACTCTCTCTCTAACTGGCTTGCGGTTCAATAAAGCTGTGGGAAGATACAGATAGGTTCAATAAAAAATCACT
dot-bracket secondary structure
..............(((.(((.((((((((.((((((((((((.((((((((((.(((.((((((....))))))((.....((((.((.(((.....))
))).))))....))..)))..)))))))))).)))))))))))).)))))))).))).))).............
SIMILARITIES| miRBase csi-MIR396b: 0.000000000000002 PMRD gma-miR396a: 0.000000000000002 microPC miR396: 4e-57 | UniProt no hits RFAM MIR396: 0.0000000000007 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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