ABOUT THIS RECORDspecies: Pseudoroegneria spicata
miRNA family: MIR1120
source: miRNEST
Taxonomy by NCBI:
Pseudoroegneria spicata Pseudoroegneria Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCCTCTGTAAAGAAATATAA miRNA* ATATCACTATATGAAGGGAGT mismatches: 4 bulges: 0 |
pre-miRNA
CACAGTAGTACTCCCTCTGTAAAGAAATATAAGAGCGTTTATATCACTATATGAAGGGAGTATCTCCCT
dot-bracket secondary structure
.......(((((((((.((((.((..(((((((....)))))))..)).)))).)))))))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
CACAGTAGTACTCCCTCTGTAAAGAAATATAAGAGCGTTTATATCACTATATGAAGGGAGTATCTCCCT
dot-bracket secondary structure
.......(((((((((.((((.((..(((((((....)))))))..)).)))).)))))))))......
SIMILARITIES| miRBase tae-MIR1121: 0.0000000000002 PMRD ave-miR1120: 2e-16 microPC no hits | UniProt no hits RFAM MIR1122: 0.000000000000004 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
