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Species belonging to selected taxon:

Pseudoroegneria spicata



ABOUT THIS RECORD

ID: MNEST002271
species: Pseudoroegneria spicata
miRNA family: MIR2673
source: miRNEST

Taxonomy by NCBI:
Pseudoroegneria spicata Pseudoroegneria Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCTCTTCCTCTTCCTCTTCTC

miRNA*
 GAAGAGAAGAGAAGAAAAG

mismatches: 3
bulges: 2
View larger
pre-miRNA
 ATTTCTTCCACCTCTCTTTCTTCTCTTCCTCTTCCTCTTCTCCGCTTCCGAACCTCTTCCTCCTCCGAGCGAGCTCTCCCAGAAGCAATCGAGCGAGCAG
CTTTCTTCTTCTTCTTCCTCCTCCTCTTCTTGGTCTTGGCGAGCAGGGAGGGGTGCTCGCACCAACTCTGCCGGCGGGCCGGACCGGGCAGGGGATAGGA
TCTGAAGAAGCTTCAGAGGCAAGACGATCGATCCATCTTGGGGTTGGAATCCTGTCGTGGTGATCGATCGAGCTCCATGATGAATGTGCTCTCCAGCGGC
AACCCCCAGAACCTGCGCATAATCCATCACCATCAACACGATATTTTATTATGTCCACGGCGGAGCAGCTCAGGCCAGCTCGCTGTCAACGCACATCCTC
CTAGCCTCACCCGCGCGAGGAGGCCTTCTTCTAGCTCCTTCCGCCGAGGCGCAGTCGTCGCCGTGAAAGCCGTCGCCGACGGCGGCGGCGAATCCAGCAG
CGGCAAAGACGACGACGACGACGACGATGAAGAGAAGAGAAGAAAAGATGACGAGGAGGGCATGT

dot-bracket secondary structure
......(((.((((((..((((.(((((.(((((.(((((..((.((((.((((((.........(((.((.((.(((...(((((....((((.....)
)))..((((((....((((..((((((.((((((((.(((..((..((((.((((....))))..))))....))..))))))))))).)))))).))))
...))))))))))).)))))....)).))).........))))))))))...((((((((((((.(((.((((..(((.....))).))))....(((.(
(............)))))...))).))))))....(((.((((...)))).)))((.((((((((.((((.(((((.((...........))...(((((
...((.......))..))))))))))......))))..)))))))).))((..(((((((((((....(((((((((...)))))))))..........)
))))...))))))..)))))))).))..))))))))))))))).)))).)).)))).))).....


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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