ABOUT THIS RECORDspecies: Pseudoroegneria spicata
miRNA family: MIRf34
source: miRNEST
Taxonomy by NCBI:
Pseudoroegneria spicata Pseudoroegneria Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTGGGACGGAGGGAGTACAT miRNA* CCTACTCACTCCGTCCCATGAT mismatches: 5 bulges: 0 |
pre-miRNA
CCCTTTACAACCTACTCACTCCGTCCCATGATGTAAGACGTTTTTGCAAGCTGGGACGGAGGGAGTACATGGCAAAG
dot-bracket secondary structure
............(((((.((((((((((...(((((((...)))))))...)))))))))).)))))..........
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCCTTTACAACCTACTCACTCCGTCCCATGATGTAAGACGTTTTTGCAAGCTGGGACGGAGGGAGTACATGGCAAAG
dot-bracket secondary structure
............(((((.((((((((((...(((((((...)))))))...)))))))))).)))))..........
SIMILARITIES| miRBase tae-MIR1130: 0.0000000009 PMRD tae-miR1130: 0.0000000009 microPC miR1436: 0.0000009 | UniProt no hits RFAM MIR1122: 0.000004 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
