ABOUT THIS RECORDspecies: Quercus petraea
miRNA family: MIR2911
source: miRNEST
Taxonomy by NCBI:
Quercus petraea Quercus Fagaceae Fagales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGCCGGGGGACGGACTGGGAA miRNA* CCCAGTCCCGAACCCGTCGG mismatches: 5 bulges: 1 |
pre-miRNA
GTCCCAGTCCCGAACCCGTCGGCTGTCGGCGGACTGCTCGAGCTGCTCCCGCGGCGAGAGCGGGTCGCCGCGTGCCGGCCGGGGGACGGACTGGGAACGA
CCGCTTCGGCGGTCTTCCCCGGGCGTC
dot-bracket secondary structure
.(((((((((....(((((((((((.((((((.((((((..(((((....)))))..)))))).)))))))).))))).))))....)))))))))..((
((((....)))))).............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTCCCAGTCCCGAACCCGTCGGCTGTCGGCGGACTGCTCGAGCTGCTCCCGCGGCGAGAGCGGGTCGCCGCGTGCCGGCCGGGGGACGGACTGGGAACGA
CCGCTTCGGCGGTCTTCCCCGGGCGTC
dot-bracket secondary structure
.(((((((((....(((((((((((.((((((.((((((..(((((....)))))..)))))).)))))))).))))).))))....)))))))))..((
((((....)))))).............
SIMILARITIES| miRBase peu-MIR2911: 2e-39 PMRD peu-miR2911: 2e-39 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
