ABOUT THIS RECORDspecies: Quercus robur
miRNA family: MIRf519
source: miRNEST
Taxonomy by NCBI:
Quercus robur Quercus Fagaceae Fagales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCATAGCATCATGAGCAATCA miRNA* ACTGCTTATGATGTTATTATCAT mismatches: 2 bulges: 2 |
pre-miRNA
ATTAGATAGCACTGGAACAGTTAATACTTGGAATTGAGAATGCATAGCATCATGAGCAATCAGCCTTAGATTTCAGCAGATTGACTGCTTATGATGTTAT
TATCATTCCATGTAAACTCCAGCCAAATTAATTCTAGCTGCT
dot-bracket secondary structure
.......(((((((((...((((((..(((((.((..(((((.(((((((((((((((.((((.((...........)).)))).)))))))))))))))
...)))))......)).)))))....))))))))))).))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATTAGATAGCACTGGAACAGTTAATACTTGGAATTGAGAATGCATAGCATCATGAGCAATCAGCCTTAGATTTCAGCAGATTGACTGCTTATGATGTTAT
TATCATTCCATGTAAACTCCAGCCAAATTAATTCTAGCTGCT
dot-bracket secondary structure
.......(((((((((...((((((..(((((.((..(((((.(((((((((((((((.((((.((...........)).)))).)))))))))))))))
...)))))......)).)))))....))))))))))).))))
SIMILARITIES| miRBase no hits PMRD ath-miRf11142-akr: 0.000002 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
