miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002338
species: Raphanus raphanistrum
miRNA family: MIR168
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGCTTGGTGCAGGTCGGGAA

miRNA*
 CCCGCCTTGTATCAAGTGAAT

mismatches: 2
bulges: 0
View larger
pre-miRNA
 TATGTTGCGGCGGCCTCTGATTCGCTTGGTGCAGGTCGGGAACTGATTGGCTGACACAGCCACGTGGGTTTTCATGGTTGGCTCGTGAGCAGGGATCGGA
TCCCGCCTTGTATCAAGTGAATCCGAGTCCGACGTGAAAG

dot-bracket secondary structure
....(((((.(((.(((.(((((((((((((((((.(((((.((((((.(((..(((((((.(((((....)))))...)))).))))))...)))))).
))))).))))))))))))))))).))).))).)))))...


SIMILARITIES
miRBase bna-MIR168: 8e-58

PMRD bna-miR168: 8e-58

microPC miR168: 0.000000000002		UniProt no hits

RFAM MIR168: 3e-27		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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