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Species belonging to selected taxon:
Brassica napus
,
Brassica oleracea var. alboglabra
,
Brassica rapa
,
Limnanthes alba
,
Raphanus raphanistrum
,
Raphanus raphanistrum subsp. landra
,
Raphanus raphanistrum subsp. maritimus
,
Raphanus sativus
,
Raphanus sativus var. oleiformis
,
Thellungiella halophila
,
Tropaeolum majus
,
Carica papaya
,
Arabidopsis thaliana
,
Brassica oleracea
ABOUT THIS RECORD
ID:
MNEST002338
species:
Raphanus raphanistrum
miRNA family:
MIR168
source:
miRNEST
Taxonomy by NCBI:
Raphanus raphanistrum
Raphanus
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGCTTGGTGCAGGTCGGGAA
miRNA*
CCCGCCTTGTATCAAGTGAAT
mismatches:
2
bulges:
0
View larger
pre-miRNA
TATGTTGCGGCGGCCTCTGAT
TCGCTTGGTGCAGGTCGGGAA
CTGATTGGCTGACACAGCCACGTGGGTTTTCATGGTTGGCTCGTGAGCAGGGATCGGA
T
CCCGCCTTGTATCAAGTGAAT
CCGAGTCCGACGTGAAAG
dot-bracket secondary structure
....(((((.(((.(((.(((
((((((((((((((.(((((.
((((((.(((..(((((((.(((((....)))))...)))).))))))...)))))).
)
)))).))))))))))))))))
).))).))).)))))...
SIMILARITIES
miRBase
bna-MIR168
:
8e-58
PMRD
bna-miR168
:
8e-58
microPC
miR168
:
0.000000000002
UniProt
no hits
RFAM
MIR168: 3e-27
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record