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Species belonging to selected taxon:

Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis



ABOUT THIS RECORD

ID: MNEST002338
species: Raphanus raphanistrum
miRNA family: MIR168
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGCTTGGTGCAGGTCGGGAA

miRNA*
 CCCGCCTTGTATCAAGTGAAT

mismatches: 2
bulges: 0
View larger
pre-miRNA
 TATGTTGCGGCGGCCTCTGATTCGCTTGGTGCAGGTCGGGAACTGATTGGCTGACACAGCCACGTGGGTTTTCATGGTTGGCTCGTGAGCAGGGATCGGA
TCCCGCCTTGTATCAAGTGAATCCGAGTCCGACGTGAAAG

dot-bracket secondary structure
....(((((.(((.(((.(((((((((((((((((.(((((.((((((.(((..(((((((.(((((....)))))...)))).))))))...)))))).
))))).))))))))))))))))).))).))).)))))...


SIMILARITIES
miRBase bna-MIR168: 8e-58

PMRD bna-miR168: 8e-58

microPC miR168: 0.000000000002		UniProt no hits

RFAM MIR168: 3e-27		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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