ABOUT THIS RECORDspecies: Raphanus raphanistrum
miRNA family: MIR168
source: miRNEST
Taxonomy by NCBI:
Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGGTCGGGAC miRNA* TCCCGCCTTGCATCAACTGAAT mismatches: 2 bulges: 1 |
pre-miRNA
GGTTATGATAAAGTCACCGTCGGGCTCGGATTCGCTTGGTGCAGGTCGGGACTAATTCGCTGACACAGCCACGTGGCTCTTTTTCTTATTGGTTTGTGAG
CAGGGATTGGATCCCGCCTTGCATCAACTGAATCGGAGCTCCCACGGTGAAAACAAAAACC
dot-bracket secondary structure
((((.........(((((((.((((((.((((((.((((((((((.((((((((((((.(((.((((((((..................))).)))))..
)))))))))).))))).)))))))))).)))))).)))).)).))))))).......))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGTTATGATAAAGTCACCGTCGGGCTCGGATTCGCTTGGTGCAGGTCGGGACTAATTCGCTGACACAGCCACGTGGCTCTTTTTCTTATTGGTTTGTGAG
CAGGGATTGGATCCCGCCTTGCATCAACTGAATCGGAGCTCCCACGGTGAAAACAAAAACC
dot-bracket secondary structure
((((.........(((((((.((((((.((((((.((((((((((.((((((((((((.(((.((((((((..................))).)))))..
)))))))))).))))).)))))))))).)))))).)))).)).))))))).......))))
SIMILARITIES| miRBase aly-MIR168a: 3e-33 PMRD ath-miR168a: 1e-32 microPC miR168: 9e-52 | UniProt no hits RFAM MIR168: 7e-53 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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