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Species belonging to selected taxon:

Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus



ABOUT THIS RECORD

ID: MNEST002344
species: Raphanus raphanistrum
miRNA family: MIR156
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAGAAGAAAGAGAGCACA

miRNA*
 TAGCTCTCTGGTTTAGTGTCCAT

mismatches: 4
bulges: 2
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pre-miRNA
 CTGGTGTGGGTTTGACAGAAGAAAGAGAGCACAGTTTGAGTCGCTGCCAATCCCCTTGTAGCTCTCTGGTTTAGTGTCCATAACCTCTGG

dot-bracket secondary structure
.......(((((.((((.(((..(((((((((((.(((.((....))))).....)))).)))))))..)))..))))...)))))....


SIMILARITIES
miRBase far-MIR529: 0.000001

PMRD ath-miR156q: 0.00000000000007

microPC miR157: 0.00002		UniProt sp|Q700W2|SPL9_ARATH: 0.0000004

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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