miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis



ABOUT THIS RECORD

ID: MNEST002350
species: Raphanus raphanistrum
miRNA family: miR824
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCTTCTCATCGATGGTCTAGA

miRNA*
 TAGACCATTTGTGAGAAGGGG

mismatches: 1
bulges: 0
View larger
pre-miRNA
 GACAGGTTTGCTCGAGTTGTCTCTCATATCTAGACCATTTGTGAGAAGGGGTTTTATAGGTGCACCTCACCAATCTCTAAATGACTAAATATACAATTAG
TATTAGGCTCATATAAGGAAGTTAACTTCTATACATAAAGTGCACTGATGACTTTTCCAGATGCTATATAGATACTTTTTAGAATTAGGTCATGCCGAGT
CTCCAACTCATATATAATCGTATACACTTTTGGACATACATTTTCCCTAAGAGATGCCAAACTTCTGTCTGGAGTGGAGCTTTCTCGTGATAGCTCATAA
TTTGTAGCTTGCACAACTTAAGCTACACTAGTTTACTTGATAAAAAAATTGAGTGGAGTGGGGGAGGTGCTGGATTATTTCCCCTTCTCATCGATGGTCT
AGATTTGCGAGGTGACTCTAATAGTGGTAA

dot-bracket secondary structure
.............((((((((((.((.((((((((((((.(((((((((((....((((..(((((((.((..(((.((.((((((.(((((.......)
)))).)).)))).)).)))(((..((((.........))))..))).((((((((((.(((...(((....)))...))).)))..))))))).((....
(((((.((((......((((..((.(((.((((.(((...((((....)))).)))))))(((((.....))))).(((((.((....)).)))))....
..(((((((((.......)))))))))..))).))..))))........))))))))).)))))))))))....))))..))))))))))).))))))))
)))).)).))))))))))............


SIMILARITIES
miRBase bra-MIR824: 0.00000000000003

PMRD bra-miR824: 0.00000000000003

microPC no hits		UniProt no hits

RFAM MIR824: 0.0000000000005		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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