miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002351
species: Raphanus raphanistrum
miRNA family: MIR824
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TAGACCATTTGTGAGAAGGGG

miRNA*
 CCTTCTCATCGATGGTCTAGA

mismatches: 1
bulges: 0
View larger
pre-miRNA
 TGACAGGTTTGCTCGAGTTGTCTCTCATATCTAGACCATTTGTGAGAAGGGGTTTTATAGGTGCACCTCACCAATCTCTAAATGACTAAATATACAATTA
GTATTAGGCTCATATAAGGAAGTTAACTTCTATACATAAAGTGCACTGATGACTTTTCCAGATGCTATATAGATACTTTTTAGAATTAGGTCATGCCGAG
TCTCCAACTCATATATAATCGTATACACTTTTGGACATACATTTTCCCTAAGAGATGCCAAACTTCTGTCTGGAGTGGAGCTTTCTCGTGATAGCTCATA
ATTTGTAGCTTGCACAACTTAAGCTACACTAGTTTACTTGATAAAAAAATTGAGTGGAGTGGGGGAGGTGCTGGATTATTTCCCCTTCTCATCGATGGTC
TAGATTTGCGAGGTGACTCTAATAGTGGTAAA

dot-bracket secondary structure
..............((((((((((.((.((((((((((((.(((((((((((....((((..(((((((.((..(((.((.((((((.(((((.......
))))).)).)))).)).)))(((..((((.........))))..))).((((((((((.(((...(((....)))...))).)))..))))))).((...
.(((((.((((......((((..((.(((.((((.(((...((((....)))).)))))))(((((.....))))).(((((.((....)).)))))...
...(((((((((.......)))))))))..))).))..))))........))))))))).)))))))))))....))))..))))))))))).)))))))
))))).)).)))))))))).............


SIMILARITIES
miRBase bra-MIR824: 0.00000000000003

PMRD bra-miR824: 0.00000000000003

microPC no hits		UniProt no hits

RFAM MIR824: 0.0000000000005		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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