miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis



ABOUT THIS RECORD

ID: MNEST002352
species: Raphanus raphanistrum
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GCATCTTCATCATCATCGTCG

miRNA*
 ATGAGGATGATGATGATGATG

mismatches: 3
bulges: 0
View larger
pre-miRNA
 CCGGGGATCGTTTAACGGAGGCTATTGAGGTTTTCACGGCGGCATCTTCATCATCATCGTCGGGAATCTCGGGATATGCATCTGCCATGTCTCTACGTGA
TTTGGATCATCACTATGATGACGATGAGGATGATGATGATGATGATGTTGATTGTTATAGCGATGTTGAAGAAGGAGATGAA

dot-bracket secondary structure
.......((.(((((((...(((((...((((...(((.((.((((.((((((((.((((((.(((((..(((((((((....).)))))))).....))
)))...((((((...)))))))))))).)))))))).)))).)).))).))))...)))))..)))))))))..........


SIMILARITIES
miRBase no hits

PMRD no hits

microPC miR414: 5e-35		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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