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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002353
species: Raphanus raphanistrum
miRNA family: MIR159
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTGGATTGAAGGGAGCTCTA

miRNA*
 GGGCTCCTTATAGTTCAAACG

mismatches: 1
bulges: 0
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pre-miRNA
 AGAACTGGAAGTAGGGCTCCTTATAGTTCAAACGAGAGTTTAGCGGGGTAAAGAAAAGCTGCTAAGCTATGGATACCATAAGCCCTAATCCTTGTATTGA
AAAAGGACTTGGTAATATGGCTTGCATATCTCAGGAGCTTTAACTTACCCTTTAATTGCTTTTACCCTTCTTTGGATTGAAGGGAGCTCTACATCTTCTT
T

dot-bracket secondary structure
......(((.((((((((((((.(((((((((.(((.((..((((((((((...((((((.((.((.((((.......((((((.((..((..((.((..
..))..))..))...)).)))))))))).)).)).))))))...)))))))......)))...)).))).))))))))).)))))))))))).)))....
.


SIMILARITIES
miRBase bra-MIR159a: 4e-76

PMRD bra-miR159a: 4e-76

microPC miR159: 5e-97		UniProt no hits

RFAM MIR159: 2e-66		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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