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Species belonging to selected taxon:

Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis



ABOUT THIS RECORD

ID: MNEST002353
species: Raphanus raphanistrum
miRNA family: MIR159
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTGGATTGAAGGGAGCTCTA

miRNA*
 GGGCTCCTTATAGTTCAAACG

mismatches: 1
bulges: 0
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pre-miRNA
 AGAACTGGAAGTAGGGCTCCTTATAGTTCAAACGAGAGTTTAGCGGGGTAAAGAAAAGCTGCTAAGCTATGGATACCATAAGCCCTAATCCTTGTATTGA
AAAAGGACTTGGTAATATGGCTTGCATATCTCAGGAGCTTTAACTTACCCTTTAATTGCTTTTACCCTTCTTTGGATTGAAGGGAGCTCTACATCTTCTT
T

dot-bracket secondary structure
......(((.((((((((((((.(((((((((.(((.((..((((((((((...((((((.((.((.((((.......((((((.((..((..((.((..
..))..))..))...)).)))))))))).)).)).))))))...)))))))......)))...)).))).))))))))).)))))))))))).)))....
.


SIMILARITIES
miRBase bra-MIR159a: 4e-76

PMRD bra-miR159a: 4e-76

microPC miR159: 5e-97		UniProt no hits

RFAM MIR159: 2e-66		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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