miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis



ABOUT THIS RECORD

ID: MNEST002356
species: Raphanus raphanistrum
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCATCATCATCATCTTCTTCC

miRNA*
 AGGAGGAGGGAAGATTGTTTCA

mismatches: 5
bulges: 1
View larger
pre-miRNA
 ATCTGTGAATATGGCCGTGCATCATCATCATCATCTTCTTCCAGGTGTAGTCAACGGGTTTAGTCCGGCTCCAGGTTTTATGTTTAATGTAGGCCAAGGT
TTTGAGAAGAGTGAAGAGCATACCGGAGGAGGAGGGAAGATTGTTTCAGGTAGCCAAGGGAGGGAT

dot-bracket secondary structure
...........((((..(((...((.(((.((.(((((((((.(((((..(((.....(((((.((((((.....................))))..)).
.))))).....))).....))))))))))))))..)).))).)).....)))))))..........


SIMILARITIES
miRBase no hits

PMRD ghr-miR414f: 0.00003

microPC no hits		UniProt sp|Q94AV5|WIP3_ARATH: 0.00006

RFAM mir-598: 0.0006		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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