miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002356
species: Raphanus raphanistrum
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCATCATCATCATCTTCTTCC

miRNA*
 AGGAGGAGGGAAGATTGTTTCA

mismatches: 5
bulges: 1
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pre-miRNA
 ATCTGTGAATATGGCCGTGCATCATCATCATCATCTTCTTCCAGGTGTAGTCAACGGGTTTAGTCCGGCTCCAGGTTTTATGTTTAATGTAGGCCAAGGT
TTTGAGAAGAGTGAAGAGCATACCGGAGGAGGAGGGAAGATTGTTTCAGGTAGCCAAGGGAGGGAT

dot-bracket secondary structure
...........((((..(((...((.(((.((.(((((((((.(((((..(((.....(((((.((((((.....................))))..)).
.))))).....))).....))))))))))))))..)).))).)).....)))))))..........


SIMILARITIES
miRBase no hits

PMRD ghr-miR414f: 0.00003

microPC no hits		UniProt sp|Q94AV5|WIP3_ARATH: 0.00006

RFAM mir-598: 0.0006		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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