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Species belonging to selected taxon:
Brassica napus
,
Brassica oleracea var. alboglabra
,
Brassica rapa
,
Limnanthes alba
,
Raphanus raphanistrum
,
Raphanus raphanistrum subsp. landra
,
Raphanus raphanistrum subsp. maritimus
,
Raphanus sativus
,
Raphanus sativus var. oleiformis
,
Thellungiella halophila
,
Tropaeolum majus
,
Carica papaya
,
Arabidopsis thaliana
,
Brassica oleracea
ABOUT THIS RECORD
ID:
MNEST002357
species:
Raphanus raphanistrum
miRNA family:
MIR414
source:
miRNEST
Taxonomy by NCBI:
Raphanus raphanistrum
Raphanus
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCATCATCATCATCATCATCA
miRNA*
GGACGAAATGATGATGGCA
mismatches:
5
bulges:
1
View larger
pre-miRNA
TTCCTCATCATCAACCCCATCATCGTCATCG
TCATCATCATCATCATCATCA
ACATCATCATCATCTTCATCACCATCACGTTTTTTGTTT
GGACGAAAT
GATGATGGCA
AGGACTGGTCAGGCATTGGGAGATC
dot-bracket secondary structure
...(((.(((....((..((((..(((...(
((((((((((..((.((...(
(((...............................)))).
.)).)).))
))))))))).
..)))))))..))...))))))...
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record