miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis



ABOUT THIS RECORD

ID: MNEST002358
species: Raphanus raphanistrum
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCATCGTCATCATCATCGTCA

miRNA*
 ATGATGCATGATACGGTGAAA

mismatches: 0
bulges: 2
View larger
pre-miRNA
 AAGTGATCCATGACTTAGCCTGCCATCCGGGTCATCGTCATCATCATCGTCATCACCACATTCTCGACGAAGTCGGGGGCTGGCGCATGGTCAATCTCAT
TGATGATGCATGATACGGTGAAAGTCTGATGATGGGCGGTGAAGTTATATG

dot-bracket secondary structure
.........(((((((.(((((.((((.((.(((((((.(((((((((((((..((((...(((((((...)))))))((....)).)))).........
)))))))).))))))))))))...)).)))).)))))....)))))))...


SIMILARITIES
miRBase ath-MIR414: 0.0005

PMRD ath-miR414: 0.0005

microPC no hits		UniProt no hits

RFAM mir-598: 0.00003		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;