miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002361
species: Raphanus raphanistrum subsp. landra
miRNA family: MIR838
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum subsp. landra Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTTCTTCTTCTTCTTGGATG

miRNA*
 TCCAGGAATGGGAGATTATC

mismatches: 4
bulges: 1
View larger
pre-miRNA
 AGGTGAAAGACGTCCAGGAATGGGAGATTATCGAGATGTGCTCAAGGCTATGCAAGGGAAGGTGGACATAAACACGTACGAGTACAAGAAAATTCCAAAA
CTATAAACCAAGTCAAATCCAGTTAATGTCTAACTCTTTTAAAGAGTGTAATTTCATGTATCAGAGTTTTCTTCTTCTTCTTGGATGTCTTTCTGT

dot-bracket secondary structure
....((((((((((((((((.((((((...((((.(((((..((...((.((.(((((....(((((((.(((...........................
.....................))).))))))).))))).)).))..))......))))).)).))....))))))..))))))))))))))))...


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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