ABOUT THIS RECORDspecies: Raphanus raphanistrum subsp. landra
miRNA family: MIR156
source: miRNEST
Taxonomy by NCBI:
Raphanus raphanistrum subsp. landra Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCACA miRNA* TGCTCACTGCTCTCTCTGTCAGA mismatches: 1 bulges: 2 |
pre-miRNA
ACAAAAGAAAAACATAGCAACTGACAGAAGAGAGTGAGCACACAAAGGTAATTTGCATATACTGCATTTGCTTCTCTTGCGTGCTCACTGCTCTCTCTGT
CAGATTCTAATGCTGATCTCTT
dot-bracket secondary structure
..............(((((.(((((((((((((((((((((.(((((((((..((((.....)))).))))))...))).))))))))).)))).)))))
))).......))))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACAAAAGAAAAACATAGCAACTGACAGAAGAGAGTGAGCACACAAAGGTAATTTGCATATACTGCATTTGCTTCTCTTGCGTGCTCACTGCTCTCTCTGT
CAGATTCTAATGCTGATCTCTT
dot-bracket secondary structure
..............(((((.(((((((((((((((((((((.(((((((((..((((.....)))).))))))...))).))))))))).)))).)))))
))).......))))).......
SIMILARITIES| miRBase aly-MIR156a: 9e-36 PMRD bna-miR156a: 5e-34 microPC miR156: 2e-33 | UniProt no hits RFAM mir-156: 9e-27 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
