ABOUT THIS RECORDspecies: Raphanus raphanistrum subsp. maritimus
miRNA family: MIRf1541
source: miRNEST
Taxonomy by NCBI:
Raphanus raphanistrum subsp. maritimus Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGGTGTTCGACGGAATGCCT miRNA* TGTTGTCTTTCAACGCCTTGC mismatches: 3 bulges: 2 |
pre-miRNA
TAAACCTCTACGGACGAGCTGGTATGTTCGAGAATGCACAGAAGGTGTTCGACGGAATGCCTGAGAGAAACTGCAAGAGATCAGTGTTGTCTTTCAACGC
CTTGCTGAATGCGTGTGTGAACTCCAAGAAGTTCGATTTGGTT
dot-bracket secondary structure
..((((....(((((....(((...(((((...((((((((((((((((.((.(((..((((((................)))).))..))).)))))))
))).)))..)))))...))))).)))....)))))....))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TAAACCTCTACGGACGAGCTGGTATGTTCGAGAATGCACAGAAGGTGTTCGACGGAATGCCTGAGAGAAACTGCAAGAGATCAGTGTTGTCTTTCAACGC
CTTGCTGAATGCGTGTGTGAACTCCAAGAAGTTCGATTTGGTT
dot-bracket secondary structure
..((((....(((((....(((...(((((...((((((((((((((((.((.(((..((((((................)))).))..))).)))))))
))).)))..)))))...))))).)))....)))))....))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q9LK57|PP226_ARATH: 1e-18 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
