ABOUT THIS RECORDspecies: Raphanus raphanistrum subsp. maritimus
miRNA family: MIRf427
source: miRNEST
Taxonomy by NCBI:
Raphanus raphanistrum subsp. maritimus Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAGAGCAAGAGCAGCTGCTTT miRNA* AGCAGTGGCTCTTGTGCTCCC mismatches: 2 bulges: 0 |
pre-miRNA
CGTGATCTAAGGAGAGCAAGAGCAGCTGCTTTGAACATTGTTCCCACATCTACAGGAGCAGCCAAAGCAGTGGCTCTTGTGCTCCCTAACCTCA
dot-bracket secondary structure
.......((.((((.((((((((.(((((((((....(((((((..........))))))).))))))))).)))))))).)))).))......
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CGTGATCTAAGGAGAGCAAGAGCAGCTGCTTTGAACATTGTTCCCACATCTACAGGAGCAGCCAAAGCAGTGGCTCTTGTGCTCCCTAACCTCA
dot-bracket secondary structure
.......((.((((.((((((((.(((((((((....(((((((..........))))))).))))))))).)))))))).)))).))......
SIMILARITIES| miRBase no hits PMRD ath-miRf10919-akr: 1e-37 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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