miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002374
species: Raphanus raphanistrum subsp. maritimus
miRNA family: MIRf206
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum subsp. maritimus Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCCGCCGCCGTGTTCTGCCGA

miRNA*
 GGTGGGGCGCGGCGGCGCGTT

mismatches: 3
bulges: 0
View larger
pre-miRNA
 CAATCTCCGGCGGGTGGGGCGCGGCGGCGCGTTCCTGTGACGCATGTCAATCAGTATCCGCCGCCGTGTTCTGCCGAGTTGACTCT

dot-bracket secondary structure
.......((((.(((((((((((((((((.((..(((.(((....)))...))).)).)))))))))))))))))..)))).....


SIMILARITIES
miRBase no hits

PMRD ath-miRf10311-akr: 5e-21

microPC no hits		UniProt sp|Q9FHH8|COL5_ARATH: 0.000000007

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




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