ABOUT THIS RECORDspecies: Raphanus raphanistrum subsp. maritimus
miRNA family: MIRf206
source: miRNEST
Taxonomy by NCBI:
Raphanus raphanistrum subsp. maritimus Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCGCCGCCGTGTTCTGCCGA miRNA* GGTGGGGCGCGGCGGCGCGTT mismatches: 3 bulges: 0 |
pre-miRNA
CAATCTCCGGCGGGTGGGGCGCGGCGGCGCGTTCCTGTGACGCATGTCAATCAGTATCCGCCGCCGTGTTCTGCCGAGTTGACTCT
dot-bracket secondary structure
.......((((.(((((((((((((((((.((..(((.(((....)))...))).)).)))))))))))))))))..)))).....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CAATCTCCGGCGGGTGGGGCGCGGCGGCGCGTTCCTGTGACGCATGTCAATCAGTATCCGCCGCCGTGTTCTGCCGAGTTGACTCT
dot-bracket secondary structure
.......((((.(((((((((((((((((.((..(((.(((....)))...))).)).)))))))))))))))))..)))).....
SIMILARITIES| miRBase no hits PMRD ath-miRf10311-akr: 5e-21 microPC no hits | UniProt sp|Q9FHH8|COL5_ARATH: 0.000000007 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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