ABOUT THIS RECORDspecies: Raphanus raphanistrum subsp. maritimus
miRNA family: MIR162
source: miRNEST
Taxonomy by NCBI:
Raphanus raphanistrum subsp. maritimus Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCA miRNA* GAGGCAGCGGTTCATCGATC mismatches: 3 bulges: 0 |
pre-miRNA
CGGAAAGTCACTGGAGGCAGCGGTTCATCGATCTCTTCCTGTGGATTTTTTTGTTTGTTTCTTTGTTGTTGTTGGAAAGAGATTAAAAGCACGAACAGATC
GATAAACCTCTGCATCCAGCGGTTGCC
dot-bracket secondary structure
)((..((((.(((((.((((.((((.((((((((.(((.(((...((((...((((.(((((.(......)..))))).)))).))))))).))).)))))
))).)))).)))).))))).)))).))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CGGAAAGTCACTGGAGGCAGCGGTTCATCGATCTCTTCCTGTGGATTTTTTTGTTTGTTTCTTTGTTGTTGTTGGAAAGAGATTAAAAGCACGAACAGATC
GATAAACCTCTGCATCCAGCGGTTGCC
dot-bracket secondary structure
)((..((((.(((((.((((.((((.((((((((.(((.(((...((((...((((.(((((.(......)..))))).)))).))))))).))).)))))
))).)))).)))).))))).)))).))
SIMILARITIES| miRBase cpa-MIR162a: 7.0E-15 PMRD cpa-miR162a: 7.0E-15 microPC miR162: 1.0E-19 | UniProt no hits RFAM 2MIR162_2: 1.0E-10 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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