miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002380
species: Raphanus raphanistrum subsp. maritimus
miRNA family: MIR2673
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum subsp. maritimus Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCTCTTCCTCTTCCTCTTGGG

miRNA*
 ATAGAGGAGGAGGAGGAGCAG

mismatches: 4
bulges: 0
View larger
pre-miRNA
 ATCGATCAATCAATAGAGGAGGAGGAGGAGCAGCAGATCTGTGGCCGTCCGCCGTGCAGTAATTATGGGCGTTATTAAATTTGGAGTCTTCCTCTTCCTC
TTCCTCTTGGGGCTGACCAC

dot-bracket secondary structure
.....(((.((...((((((((((((((((...(((((.((....((((((..((......))..))))))....)).)))))........)))))))))
)))))))...)).)))....


SIMILARITIES
miRBase mtr-MIR2673a: 0.000006

PMRD no hits

microPC no hits		UniProt no hits

RFAM 7SK: 0.0004		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




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