ABOUT THIS RECORDspecies: Raphanus raphanistrum subsp. maritimus
miRNA family: MIR2673
source: miRNEST
Taxonomy by NCBI:
Raphanus raphanistrum subsp. maritimus Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTCTTCCTCTTCCTCTTGGG miRNA* ATAGAGGAGGAGGAGGAGCAG mismatches: 4 bulges: 0 |
pre-miRNA
ATCGATCAATCAATAGAGGAGGAGGAGGAGCAGCAGATCTGTGGCCGTCCGCCGTGCAGTAATTATGGGCGTTATTAAATTTGGAGTCTTCCTCTTCCTC
TTCCTCTTGGGGCTGACCAC
dot-bracket secondary structure
.....(((.((...((((((((((((((((...(((((.((....((((((..((......))..))))))....)).)))))........)))))))))
)))))))...)).)))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
ATCGATCAATCAATAGAGGAGGAGGAGGAGCAGCAGATCTGTGGCCGTCCGCCGTGCAGTAATTATGGGCGTTATTAAATTTGGAGTCTTCCTCTTCCTC
TTCCTCTTGGGGCTGACCAC
dot-bracket secondary structure
.....(((.((...((((((((((((((((...(((((.((....((((((..((......))..))))))....)).)))))........)))))))))
)))))))...)).)))....
SIMILARITIES| miRBase mtr-MIR2673a: 0.000006 PMRD no hits microPC no hits | UniProt no hits RFAM 7SK: 0.0004 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
