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Species belonging to selected taxon:
Raphanus raphanistrum subsp. maritimus
ABOUT THIS RECORD
ID:
MNEST002382
species:
Raphanus raphanistrum subsp. maritimus
miRNA family:
MIR414
source:
miRNEST
Taxonomy by NCBI:
Raphanus raphanistrum subsp. maritimus
Raphanus raphanistrum
Raphanus
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCATCATCATCATCTTCTTCC
miRNA*
AGGAGGAGGGAAGATTGTTTCA
mismatches:
5
bulges:
1
View larger
pre-miRNA
ATCTGTGAATATGGCCGTGCA
TCATCATCATCATCTTCTTCC
AGGTGTAGTCAACGGGTTTAGTCCGGCTCCAGGTTTTATGTTTAATGTAGGCCAAGGT
TTTGAGAAGAGTGAAGAGCATACCGG
AGGAGGAGGGAAGATTGTTTCA
GGTAGCCAAGGGAGGGAT
dot-bracket secondary structure
...........((((..(((.
..((.(((.((.(((((((((
.(((((..(((.....(((((.((((((.....................))))..)).
.))))).....))).....)))))))
)))))))..)).))).))....
.)))))))..........
SIMILARITIES
miRBase
no hits
PMRD
ghr-miR414f
:
0.00003
microPC
no hits
UniProt
sp|Q94AV5|WIP3_ARATH: 0.00006
RFAM
mir-598: 0.0006
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
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