miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002390
species: Raphanus sativus
miRNA family: MIRf1147
source: miRNEST

Taxonomy by NCBI:
Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TACTGAACCGGTCCGGTTTAG

miRNA*
 ATACTGTTCGTTCTATATT

mismatches: 4
bulges: 2
View larger
pre-miRNA
 AAATTTCAAGTTTCCTCTGCTTATACTGTTCGTTCTATATTTTTCCCAGCTTCATCTACTTCAGTTTCACCATGACTTCTTCTCTTCTTTTCCGGTCAAG
ATCGGTCTACTCATCATATCCATCCTCCTCTACACCGAAGAAACAATCCAATTCATGACGAGGATACTGAACCGGTCCGGTTTAGGAGAGGATACGTACG
CCCC

dot-bracket secondary structure
.........((.((((((.((((.((((.((((((..(((((((..((...............(((((....(((((................)))))..
.(((((.((.....................)).))))).)))))...........))..)))))))..))).)))..)))).)))))))))).)).....
....


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|Q9SS39|KCS14_ARATH: 4e-16

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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