ABOUT THIS RECORDspecies: Raphanus sativus
miRNA family: MIRf144
source: miRNEST
Taxonomy by NCBI:
Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GATGGCGTATGAGGAGCCAAG miRNA* TGGCTCCCTGTATGCCATACA mismatches: 3 bulges: 0 |
pre-miRNA
CATGATACATATATACATAGTACATATATGCCTGGCTCCCTGTATGCCATACACTAAGCTCATCGACCATCGAGGACTTACGTGGATGGCGTATGAGGAG
CCAAGCATATTTTCATATGCATATACATCTTTCT
dot-bracket secondary structure
...(((...(((((.((((......((((((.(((((((.((((((((((.(((((((.((.((((...)))).)))))).))).)))))))))).))))
))).)))))).....)))).))))).))).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CATGATACATATATACATAGTACATATATGCCTGGCTCCCTGTATGCCATACACTAAGCTCATCGACCATCGAGGACTTACGTGGATGGCGTATGAGGAG
CCAAGCATATTTTCATATGCATATACATCTTTCT
dot-bracket secondary structure
...(((...(((((.((((......((((((.(((((((.((((((((((.(((((((.((.((((...)))).)))))).))).)))))))))).))))
))).)))))).....)))).))))).))).....
SIMILARITIES| miRBase bra-MIR160a: 3e-29 PMRD bra-miR160a: 3e-29 microPC miR160: 1e-22 | UniProt no hits RFAM mir-160: 4e-17 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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