ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIRf191
source: miRNEST
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCCATGCCTTCCTTGTGTATA miRNA* GACACGAGAGGCATGGAAC mismatches: 4 bulges: 2 |
pre-miRNA
GCTCGGACTCAGAGACACGAGAGGCATGGAACCTGGCGATGAAGGCAGAAGCTTTACGGTCAATACCTGGCTCAGCCACCCAATATCGCTTGTCCTCGTC
GCTGGCCCATGCCTTCCTTGTGTATACGCCGTCGTC
dot-bracket secondary structure
((.(((........(((((((((((((((...((((((((((.((((..((((....(((....))).)))).(((...........))))))).)))))
))))).))))))))..))))))).....)))..)).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GCTCGGACTCAGAGACACGAGAGGCATGGAACCTGGCGATGAAGGCAGAAGCTTTACGGTCAATACCTGGCTCAGCCACCCAATATCGCTTGTCCTCGTC
GCTGGCCCATGCCTTCCTTGTGTATACGCCGTCGTC
dot-bracket secondary structure
((.(((........(((((((((((((((...((((((((((.((((..((((....(((....))).)))).(((...........))))))).)))))
))))).))))))))..))))))).....)))..)).
SIMILARITIES| miRBase no hits PMRD ath-miRf10258-akr: 1e-53 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
