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Species belonging to selected taxon:

Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis



ABOUT THIS RECORD

ID: MNEST002401
species: Raphanus sativus
miRNA family: miR168a
source: miRNEST

Taxonomy by NCBI:
Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCCGCCTTGCATCAACTGAAT

miRNA*
 TCGCTTGGTGCAGTTCGGGAC

mismatches: 3
bulges: 0
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pre-miRNA
 GGGGGCTCAGATTCGCTTGGTGCAGTTCGGGACTGATTGGCTGACACAACCACATAGGTACTTTTGCCTTATTGGTTTGTAAGCATGGATTGGCTCCCGC
CTTGCATCAACTGAATCGGAGCCTC

dot-bracket secondary structure
.(((((((.((((((.(((((((((..(((((((((((.(((.(((.(((((...((((......))))...)))))))).)))...)))))).))))).
.))))))))).)))))).)))))))


SIMILARITIES
miRBase ath-MIR168a: 1e-16

PMRD ath-miRf10239-akr: 1e-16

microPC miR168: 7e-18		UniProt no hits

RFAM MIR168: 8e-18		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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